CaMac T6 vs Ca T6, with batch effect accounted for

9 June 2016

Genewise expression level

Spreadsheet, voom plot

1109 with fdr<=0.01

1951 with fdr<=0.05



Raw data format: Sample_E1_Ca6; Sample_E1_CaMac6; Sample_E3_Ca6; Sample_E3_CaMac6
5674 of 6214 features kept after filtering
(required at least one sample with 10 reads)
df = 11.767855
sd = 1.333163
noise combined p-value = 0.285692
noise fit score = 0.268866 bits

Design matrix

[------] test coefficients
      0       1       0  Sample_E1_Ca6
      1       1       0  Sample_E1_CaMac6
      0       1       1  Sample_E3_Ca6
      1       1       1  Sample_E3_CaMac6