CaMac T9 vs Ca T9, with batch effect accounted for

9 June 2016

Genewise expression level

Spreadsheet, voom plot

17 with fdr<=0.01

250 with fdr<=0.05



Raw data format: Sample_E1_Ca9; Sample_E1_CaMac9; Sample_E3_Ca9; Sample_E3_CaMac9
5693 of 6214 features kept after filtering
(required at least one sample with 10 reads)
df = 10.025209
sd = 1.335164
noise combined p-value = 0.087874
noise fit score = 0.400046 bits

Design matrix

[------] test coefficients
      0       1       0  Sample_E1_Ca9
      1       1       0  Sample_E1_CaMac9
      0       1       1  Sample_E3_Ca9
      1       1       1  Sample_E3_CaMac9