Comparing CaMac against Mac(control) across timepoints T1, T6, T9

13 January 2016

Genewise expression level

Spreadsheet, voom plot

1040 with fdr<=0.01

1684 with fdr<=0.05



Raw data format: Sample_E1_CaMac1; Sample_E1_CaMac6; Sample_E1_CaMac9; Sample_E1_Mac1; Sample_E1_Mac6; Sample_E1_Mac9; Sample_E3_CaMac1; Sample_E3_CaMac6; Sample_E3_CaMac9; Sample_E3_Mac1; Sample_E3_Mac6; Sample_E3_Mac9
12886 of 45084 features kept after filtering
(required at least one sample with 10 reads)
df = 19.149583
sd = 0.955868
noise combined p-value = 0.000171
noise fit score = 0.823706 bits

Design matrix

[----------------------] test coefficients
      1       0       0       1       0       0       0  Sample_E1_CaMac1
      0       1       0       1       1       0       0  Sample_E1_CaMac6
      0       0       1       1       0       1       0  Sample_E1_CaMac9
      0       0       0       1       0       0       0  Sample_E1_Mac1
      0       0       0       1       1       0       0  Sample_E1_Mac6
      0       0       0       1       0       1       0  Sample_E1_Mac9
      1       0       0       1       0       0       1  Sample_E3_CaMac1
      0       1       0       1       1       0       1  Sample_E3_CaMac6
      0       0       1       1       0       1       1  Sample_E3_CaMac9
      0       0       0       1       0       0       1  Sample_E3_Mac1
      0       0       0       1       1       0       1  Sample_E3_Mac6
      0       0       0       1       0       1       1  Sample_E3_Mac9