BY4741 and Δccr4
18 June 2014
Raw data format: logRep1; logRep2; deltaccr4logRep1; deltaccr4logRep2; deltaccr4logRep3
5634 of 6532 features kept after filtering
(required at least one sample with 10 reads)
4.7 degrees of freedom in prior
33 with fdr<=0.01
141 with fdr<=0.05
Raw data format: logRep1; logRep2; deltaccr4logRep1; deltaccr4logRep2; deltaccr4logRep3
5259 of 6532 features kept after filtering
(required sufficient samples with 10 poly(A) reads to fit linear model)
variance = 296.4 / polya_read_count + 0.001131 * tail_length^2
14.0 degrees of freedom in prior
3519 with fdr<=0.01
4149 with fdr<=0.05
Raw data format: logRep1; logRep2; deltaccr4logRep1; deltaccr4logRep2; deltaccr4logRep3
11939 of 12631 features kept after filtering
(required at least one sample with 10 reads)
5.5 degrees of freedom in prior
100 with fdr<=0.01
285 with fdr<=0.05
Raw data format: logRep1; logRep2; deltaccr4logRep1; deltaccr4logRep2; deltaccr4logRep3
10288 of 12631 features kept after filtering
(required sufficient samples with 10 poly(A) reads to fit linear model)
variance = 232.7 / polya_read_count + 0.001339 * tail_length^2
5.6 degrees of freedom in prior
4091 with fdr<=0.01
5730 with fdr<=0.05
Raw data format: logRep1-peak1; logRep2-peak1; deltaccr4logRep1-peak1; deltaccr4logRep2-peak1; deltaccr4logRep3-peak1; logRep1-peak2; logRep2-peak2; deltaccr4logRep1-peak2; deltaccr4logRep2-peak2; deltaccr4logRep3-peak2
1715 of 1717 features kept after filtering
(required at least one sample with 10 reads)
7.5 degrees of freedom in prior
0 with fdr<=0.01
0 with fdr<=0.05
Raw data format: logRep1-peak1; logRep2-peak1; deltaccr4logRep1-peak1; deltaccr4logRep2-peak1; deltaccr4logRep3-peak1; logRep1-peak2; logRep2-peak2; deltaccr4logRep1-peak2; deltaccr4logRep2-peak2; deltaccr4logRep3-peak2
1401 of 1717 features kept after filtering
(required sufficient samples with 10 poly(A) reads to fit linear model)
variance = 252.4 / polya_read_count + 0.001294 * tail_length^2
17.9 degrees of freedom in prior
3 with fdr<=0.01
4 with fdr<=0.05