ANOVA looking for any differences between BY4741, YPEG, GAL, GLU10 and GLU20 groups

18 June 2014

Genewise expression level

Raw data format: logRep1; logRep2; YPEGRep1; YPEGRep2; GALRep1; GALRep2; GLU10Rep1; GLU10Rep2; GLU20Rep1; GLU20Rep2
5760 of 6532 features kept after filtering
(required at least one sample with 10 reads)
4.8 degrees of freedom in prior
1772 with fdr<=0.01
2670 with fdr<=0.05

Genewise tail length

Raw data format: logRep1; logRep2; YPEGRep1; YPEGRep2; GALRep1; GALRep2; GLU10Rep1; GLU10Rep2; GLU20Rep1; GLU20Rep2
5200 of 6532 features kept after filtering
(required sufficient samples with 10 poly(A) reads to fit linear model)
variance = 273.2 / polya_read_count + 0.000711 * tail_length^2
15.3 degrees of freedom in prior
370 with fdr<=0.01
638 with fdr<=0.05

Peakwise expression level

Raw data format: logRep1; logRep2; YPEGRep1; YPEGRep2; GALRep1; GALRep2; GLU10Rep1; GLU10Rep2; GLU20Rep1; GLU20Rep2
12566 of 12631 features kept after filtering
(required at least one sample with 10 reads)
4.8 degrees of freedom in prior
2603 with fdr<=0.01
4705 with fdr<=0.05

Peakwise tail length

Raw data format: logRep1; logRep2; YPEGRep1; YPEGRep2; GALRep1; GALRep2; GLU10Rep1; GLU10Rep2; GLU20Rep1; GLU20Rep2
9691 of 12631 features kept after filtering
(required sufficient samples with 10 poly(A) reads to fit linear model)
variance = 234.8 / polya_read_count + 0.000851 * tail_length^2
6.9 degrees of freedom in prior
196 with fdr<=0.01
580 with fdr<=0.05

Peak-pair expression shift

Raw data format: logRep1-peak1; logRep2-peak1; YPEGRep1-peak1; YPEGRep2-peak1; GALRep1-peak1; GALRep2-peak1; GLU10Rep1-peak1; GLU10Rep2-peak1; GLU20Rep1-peak1; GLU20Rep2-peak1; logRep1-peak2; logRep2-peak2; YPEGRep1-peak2; YPEGRep2-peak2; GALRep1-peak2; GALRep2-peak2; GLU10Rep1-peak2; GLU10Rep2-peak2; GLU20Rep1-peak2; GLU20Rep2-peak2
1716 of 1717 features kept after filtering
(required at least one sample with 10 reads)
7.2 degrees of freedom in prior
31 with fdr<=0.01
80 with fdr<=0.05

Peak-pair tail length shift

Raw data format: logRep1-peak1; logRep2-peak1; YPEGRep1-peak1; YPEGRep2-peak1; GALRep1-peak1; GALRep2-peak1; GLU10Rep1-peak1; GLU10Rep2-peak1; GLU20Rep1-peak1; GLU20Rep2-peak1; logRep1-peak2; logRep2-peak2; YPEGRep1-peak2; YPEGRep2-peak2; GALRep1-peak2; GALRep2-peak2; GLU10Rep1-peak2; GLU10Rep2-peak2; GLU20Rep1-peak2; GLU20Rep2-peak2
1314 of 1717 features kept after filtering
(required sufficient samples with 10 poly(A) reads to fit linear model)
variance = 242.4 / polya_read_count + 0.000845 * tail_length^2
27.0 degrees of freedom in prior
1 with fdr<=0.01
2 with fdr<=0.05