Varistran

Transformation

Stability plot

This is a diagnostic plot for the variance stabilizing transformation. It shows the amount of noise in the transformed data across different expression levels. If the transformation has been successful, this should be close to a flat line. However the standard deviation will usually drop off for mean counts below 5.

This plot is produced by varistran::plot_stability.

limma MDS plot

This plot is produced by limma::plotMDS. Gene selection is "pairwise".

Biplot

This plot is produced by varistran::plot_biplot.

Heatmap

Features are selected based on span of expression levels.

This plot is produced by varistran::plot_heatmap.