Gld2 vs egg

26 February 2015

Genewise expression level

Spreadsheet, voom plot

2401 with fdr<=0.01

3702 with fdr<=0.05



Raw data format: Gld2-rep1; Gld2-rep2; Gld2-rep3; 1-2-cell-egg-rep1; 1-2-cell-egg-rep2
7969 of 31753 features kept after filtering
(required at least one sample with 50 reads)
prior df = 10.1543
s.d. = 1.04356 / sqrt(weight)
noise combined p-value = 0.253861

Genewise tail length

Spreadsheet

481 with fdr<=0.01

824 with fdr<=0.05



Raw data format: Gld2-rep1; Gld2-rep2; Gld2-rep3; 1-2-cell-egg-rep1; 1-2-cell-egg-rep2
4145 of 31753 features kept after filtering
(required sufficient samples with 50 poly(A) reads to fit linear model)
prior df = 30.9097
variance = 37.4^2 / polya_read_count + 0.050609^2 * tail_length^2
noise combined p-value = 0.0326061