N2 vs Gld2

14 January 2015

Genewise expression level

Spreadsheet, voom plot

2267 with fdr<=0.01

3217 with fdr<=0.05



Raw data format: N2-rep1; N2-rep2; N2-rep3; Gld2-rep1; Gld2-rep2; Gld2-rep3
8223 of 31753 features kept after filtering
(required at least one sample with 50 reads)
prior df = 9.41701
s.d. = 1.00762 / sqrt(weight)
noise combined p-value = 0.177751

Genewise tail length

Spreadsheet

1065 with fdr<=0.01

1692 with fdr<=0.05



Raw data format: N2-rep1; N2-rep2; N2-rep3; Gld2-rep1; Gld2-rep2; Gld2-rep3
6510 of 31753 features kept after filtering
(required sufficient samples with 50 poly(A) reads to fit linear model)
prior df = 25.3191
variance = 31.9^2 / polya_read_count + 0.043780^2 * tail_length^2
noise combined p-value = 0.0593285