N2, Gld2, Gld2-pcb19, Gld2-CCF1

14 January 2015

Genewise expression level

Spreadsheet, voom plot

3659 with fdr<=0.01

4976 with fdr<=0.05



Raw data format: N2-rep1; N2-rep2; N2-rep3; Gld2-rep1; Gld2-rep2; Gld2-rep3; Gld2-pcb19-rep1; Gld2-pcb19-rep2; Gld2-CCF1-rep1; Gld2-CCF1-rep2
8312 of 31753 features kept after filtering
(required at least one sample with 50 reads)
prior df = 8.97495
s.d. = 0.961444 / sqrt(weight)
noise combined p-value = 0.39123

Genewise tail length

Spreadsheet

1966 with fdr<=0.01

2599 with fdr<=0.05



Raw data format: N2-rep1; N2-rep2; N2-rep3; Gld2-rep1; Gld2-rep2; Gld2-rep3; Gld2-pcb19-rep1; Gld2-pcb19-rep2; Gld2-CCF1-rep1; Gld2-CCF1-rep2
4694 of 31753 features kept after filtering
(required sufficient samples with 50 poly(A) reads to fit linear model)
prior df = 26.2794
variance = 28.5^2 / polya_read_count + 0.046466^2 * tail_length^2
noise combined p-value = 0.0765113