N2 vs egg

14 January 2015

Genewise expression level

Spreadsheet, voom plot

1501 with fdr<=0.01

2607 with fdr<=0.05



Raw data format: N2-rep1; N2-rep2; N2-rep3; 1-2-cell-egg-rep1; 1-2-cell-egg-rep2
7156 of 31753 features kept after filtering
(required at least one sample with 50 reads)
prior df = 9.5307
s.d. = 0.997629 / sqrt(weight)
noise combined p-value = 0.143431

Genewise tail length

Spreadsheet

278 with fdr<=0.01

665 with fdr<=0.05



Raw data format: N2-rep1; N2-rep2; N2-rep3; 1-2-cell-egg-rep1; 1-2-cell-egg-rep2
4183 of 31753 features kept after filtering
(required sufficient samples with 50 poly(A) reads to fit linear model)
prior df = 16.3172
variance = 35.5^2 / polya_read_count + 0.030130^2 * tail_length^2
noise combined p-value = 0.114579