ANOVA

27 September 2017

Genewise expression level

Spreadsheet, voom plot

2639 with fdr<=0.01

5271 with fdr<=0.05



Raw data format: N2-Rep1; N2-Rep2; pos1-RNAi-Rep1; pos1-RNAi-Rep2; gld3-RNAi-Rep1; gld3-RNAi-Rep2; gld2-RNAi-Rep1; gld2-RNAi-Rep2; mex5-RNAi-Rep1; mex5-RNAi-Rep2; mex6-RNAi-Rep1; mex6-RNAi-Rep2
12045 of 43278 features kept after filtering
(required at least one sample with 10 reads)
df = 6.866400
sd = 0.951532
noise combined p-value = 0.072146
noise fit score = 0.888645 bits

Genewise tail length

Spreadsheet

87 with fdr<=0.01

336 with fdr<=0.05



Raw data format: N2-Rep1; N2-Rep2; pos1-RNAi-Rep1; pos1-RNAi-Rep2; gld3-RNAi-Rep1; gld3-RNAi-Rep2; gld2-RNAi-Rep1; gld2-RNAi-Rep2; mex5-RNAi-Rep1; mex5-RNAi-Rep2; mex6-RNAi-Rep1; mex6-RNAi-Rep2
7469 of 43278 features kept after filtering
(required sufficient samples with 10 poly(A) reads to fit linear model)
df = 10.899184
variance = 27.344527^2 / reads + (0.045838 * avgtail)^2
noise combined p-value = 0.049873
noise fit score = 4.097178 bits