1-mers G 50 bases downstrand from stop codon

[CSV file]

Density of motif

t-test: p=1.21471e-05

Neutral set average density: 0.118556

Different set average density: 0.109799

Presence of motif

           motif_present
gene_set    absent present
  different      5     989
  neutral        6    1947

Fisher's exact test: p=0.523923

Binomial GLM: p=0.414595

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-3.4016   0.0784   0.0784   0.1004   0.1004  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)     5.7823     0.4089  14.142   <2e-16 ***
differentTRUE  -0.4950     0.6068  -0.816    0.415    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 144.95  on 2946  degrees of freedom
Residual deviance: 144.30  on 2945  degrees of freedom
AIC: 148.3

Number of Fisher Scoring iterations: 8