2-mers AC 50 bases upstrand from start codon

[CSV file]

Density of motif

t-test: p=0.0762051

Neutral set average density: 0.0455607

Different set average density: 0.0433602

Presence of motif

           motif_present
gene_set    absent present
  different    125     869
  neutral      227    1726

Fisher's exact test: p=0.471066

Binomial GLM: p=0.451161

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-2.0747   0.4971   0.4971   0.5184   0.5184  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)    2.02861    0.07060  28.733   <2e-16 ***
differentTRUE -0.08958    0.11889  -0.753    0.451    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 2156.1  on 2946  degrees of freedom
Residual deviance: 2155.5  on 2945  degrees of freedom
AIC: 2159.5

Number of Fisher Scoring iterations: 4