2-mers AG 50 bases upstrand from start codon

[CSV file]

Density of motif

t-test: p=0.00169694

Neutral set average density: 0.0448336

Different set average density: 0.0415292

Presence of motif

           motif_present
gene_set    absent present
  different     43     951
  neutral      100    1853

Fisher's exact test: p=0.365617

Binomial GLM: p=0.34319

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-2.5062   0.2974   0.3242   0.3242   0.3242  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)     2.9194     0.1027  28.438   <2e-16 ***
differentTRUE   0.1769     0.1867   0.948    0.343    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 1144.3  on 2946  degrees of freedom
Residual deviance: 1143.4  on 2945  degrees of freedom
AIC: 1147.4

Number of Fisher Scoring iterations: 5