2-mers AG 50 bases downstrand from stop codon

[CSV file]

Density of motif

t-test: p=0.0236469

Neutral set average density: 0.0238812

Different set average density: 0.0217706

Presence of motif

           motif_present
gene_set    absent present
  different    378     616
  neutral      659    1294

Fisher's exact test: p=0.0223575

Binomial GLM: p=0.0213479

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-1.4740  -1.3906   0.9073   0.9073   0.9782  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)    0.67477    0.04786  14.100   <2e-16 ***
differentTRUE -0.18642    0.08099  -2.302   0.0213 *  
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 3822.9  on 2946  degrees of freedom
Residual deviance: 3817.6  on 2945  degrees of freedom
AIC: 3821.6

Number of Fisher Scoring iterations: 4