2-mers AU 50 bases upstrand from start codon

[CSV file]

Density of motif

t-test: p=0.000557537

Neutral set average density: 0.0921761

Different set average density: 0.0972636

Presence of motif

           motif_present
gene_set    absent present
  different      4     990
  neutral       13    1940

Fisher's exact test: p=0.449698

Binomial GLM: p=0.377361

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-3.3213   0.0898   0.1156   0.1156   0.1156  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)     5.0055     0.2783  17.987   <2e-16 ***
differentTRUE   0.5059     0.5731   0.883    0.377    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 209.18  on 2946  degrees of freedom
Residual deviance: 208.34  on 2945  degrees of freedom
AIC: 212.34

Number of Fisher Scoring iterations: 8