2-mers AU 50 bases downstrand from stop codon

[CSV file]

Density of motif

t-test: p=0.397229

Neutral set average density: 0.111961

Different set average density: 0.110584

Presence of motif

           motif_present
gene_set    absent present
  different      4     990
  neutral        4    1949

Fisher's exact test: p=0.454893

Binomial GLM: p=0.338827

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-3.5188   0.0640   0.0640   0.0898   0.0898  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)     6.1888     0.5005  12.365   <2e-16 ***
differentTRUE  -0.6774     0.7082  -0.956    0.339    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 110.52  on 2946  degrees of freedom
Residual deviance: 109.63  on 2945  degrees of freedom
AIC: 113.63

Number of Fisher Scoring iterations: 9