2-mers CC 50 bases upstrand from start codon

[CSV file]

Density of motif

t-test: p=0.118386

Neutral set average density: 0.0313569

Different set average density: 0.0294165

Presence of motif

           motif_present
gene_set    absent present
  different    311     683
  neutral      582    1371

Fisher's exact test: p=0.42062

Binomial GLM: p=0.406187

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-1.5560  -1.5244   0.8412   0.8412   0.8663  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)    0.85683    0.04947  17.319   <2e-16 ***
differentTRUE -0.07012    0.08442  -0.831    0.406    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 3615.4  on 2946  degrees of freedom
Residual deviance: 3614.7  on 2945  degrees of freedom
AIC: 3618.7

Number of Fisher Scoring iterations: 4