2-mers CC 50 bases downstrand from stop codon

[CSV file]

Density of motif

t-test: p=1.54014e-11

Neutral set average density: 0.0330364

Different set average density: 0.0441851

Presence of motif

           motif_present
gene_set    absent present
  different    242     752
  neutral      669    1284

Fisher's exact test: p=3.16255e-08

Binomial GLM: p=4.28921e-08

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-1.6809  -1.4638   0.7470   0.9159   0.9159  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)    0.65195    0.04768  13.673  < 2e-16 ***
differentTRUE  0.48185    0.08795   5.479 4.29e-08 ***
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 3644.9  on 2946  degrees of freedom
Residual deviance: 3613.8  on 2945  degrees of freedom
AIC: 3617.8

Number of Fisher Scoring iterations: 4