2-mers CG 50 bases downstrand from stop codon

[CSV file]

Density of motif

t-test: p=0.00428837

Neutral set average density: 0.018935

Different set average density: 0.0212877

Presence of motif

           motif_present
gene_set    absent present
  different    349     645
  neutral      770    1183

Fisher's exact test: p=0.024553

Binomial GLM: p=0.022536

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
   Min      1Q  Median      3Q     Max  
-1.447  -1.364   0.930   1.001   1.001  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)    0.42942    0.04630   9.274   <2e-16 ***
differentTRUE  0.18476    0.08099   2.281   0.0225 *  
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 3913.2  on 2946  degrees of freedom
Residual deviance: 3907.9  on 2945  degrees of freedom
AIC: 3911.9

Number of Fisher Scoring iterations: 4