2-mers CU 50 bases upstrand from start codon

[CSV file]

Density of motif

t-test: p=0.819471

Neutral set average density: 0.0519508

Different set average density: 0.0522535

Presence of motif

           motif_present
gene_set    absent present
  different     87     907
  neutral      168    1785

Fisher's exact test: p=0.889944

Binomial GLM: p=0.89082

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-2.2150   0.4241   0.4241   0.4280   0.4280  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)    2.36321    0.08070  29.284   <2e-16 ***
differentTRUE -0.01898    0.13824  -0.137    0.891    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 1735.4  on 2946  degrees of freedom
Residual deviance: 1735.4  on 2945  degrees of freedom
AIC: 1739.4

Number of Fisher Scoring iterations: 5