2-mers GA 50 bases downstrand from stop codon

[CSV file]

Density of motif

t-test: p=2.50995e-06

Neutral set average density: 0.037491

Different set average density: 0.032334

Presence of motif

           motif_present
gene_set    absent present
  different    217     777
  neutral      329    1624

Fisher's exact test: p=0.00111303

Binomial GLM: p=0.00101932

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-1.8874   0.6074   0.6074   0.7018   0.7018  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)    1.59659    0.06046  26.408  < 2e-16 ***
differentTRUE -0.32105    0.09773  -3.285  0.00102 ** 
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 2825.0  on 2946  degrees of freedom
Residual deviance: 2814.3  on 2945  degrees of freedom
AIC: 2818.3

Number of Fisher Scoring iterations: 4