2-mers GC 50 bases upstrand from start codon

[CSV file]

Density of motif

t-test: p=0.879985

Neutral set average density: 0.0225294

Different set average density: 0.0223944

Presence of motif

           motif_present
gene_set    absent present
  different    343     651
  neutral      697    1256

Fisher's exact test: p=0.540971

Binomial GLM: p=0.525681

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-1.4588  -1.4355   0.9200   0.9396   0.9396  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)    0.58890    0.04723  12.468   <2e-16 ***
differentTRUE  0.05188    0.08175   0.635    0.526    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 3826.5  on 2946  degrees of freedom
Residual deviance: 3826.1  on 2945  degrees of freedom
AIC: 3830.1

Number of Fisher Scoring iterations: 4