2-mers GC 50 bases downstrand from stop codon

[CSV file]

Density of motif

t-test: p=0.285804

Neutral set average density: 0.0185868

Different set average density: 0.0194366

Presence of motif

           motif_present
gene_set    absent present
  different    383     611
  neutral      784    1169

Fisher's exact test: p=0.403121

Binomial GLM: p=0.39755

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-1.3811  -1.3511   0.9866   1.0131   1.0131  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)    0.39949    0.04616   8.654   <2e-16 ***
differentTRUE  0.06757    0.07987   0.846    0.398    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 3957.0  on 2946  degrees of freedom
Residual deviance: 3956.2  on 2945  degrees of freedom
AIC: 3960.2

Number of Fisher Scoring iterations: 4