2-mers GG 50 bases upstrand from start codon

[CSV file]

Density of motif

t-test: p=0.0177575

Neutral set average density: 0.0179007

Different set average density: 0.015835

Presence of motif

           motif_present
gene_set    absent present
  different    518     476
  neutral      959     994

Fisher's exact test: p=0.128644

Binomial GLM: p=0.122558

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
   Min      1Q  Median      3Q     Max  
-1.193  -1.193  -1.142   1.162   1.214  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)
(Intercept)    0.03585    0.04526   0.792    0.428
differentTRUE -0.12040    0.07798  -1.544    0.123

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 4085.4  on 2946  degrees of freedom
Residual deviance: 4083.0  on 2945  degrees of freedom
AIC: 4087

Number of Fisher Scoring iterations: 3