2-mers GG 50 bases downstrand from stop codon

[CSV file]

Density of motif

t-test: p=0.0201761

Neutral set average density: 0.0124936

Different set average density: 0.0108652

Presence of motif

           motif_present
gene_set    absent present
  different    629     365
  neutral     1172     781

Fisher's exact test: p=0.0859151

Binomial GLM: p=0.0852871

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-1.0106  -1.0106  -0.9567   1.3539   1.4155  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)   -0.40589    0.04619  -8.787   <2e-16 ***
differentTRUE -0.13834    0.08039  -1.721   0.0853 .  
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 3938.6  on 2946  degrees of freedom
Residual deviance: 3935.6  on 2945  degrees of freedom
AIC: 3939.6

Number of Fisher Scoring iterations: 4