2-mers GU 50 bases upstrand from start codon

[CSV file]

Density of motif

t-test: p=0.00719546

Neutral set average density: 0.0381669

Different set average density: 0.0353521

Presence of motif

           motif_present
gene_set    absent present
  different    163     831
  neutral      309    1644

Fisher's exact test: p=0.71006

Binomial GLM: p=0.6866

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-1.9203   0.5869   0.5869   0.5985   0.5985  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)    1.67155    0.06200  26.959   <2e-16 ***
differentTRUE -0.04267    0.10575  -0.403    0.687    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 2593.0  on 2946  degrees of freedom
Residual deviance: 2592.8  on 2945  degrees of freedom
AIC: 2596.8

Number of Fisher Scoring iterations: 3