2-mers GU 50 bases downstrand from stop codon

[CSV file]

Density of motif

t-test: p=0.031013

Neutral set average density: 0.0475166

Different set average density: 0.0449095

Presence of motif

           motif_present
gene_set    absent present
  different    102     892
  neutral      194    1759

Fisher's exact test: p=0.79555

Binomial GLM: p=0.779334

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-2.1491   0.4574   0.4574   0.4653   0.4653  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)    2.20464    0.07564   29.14   <2e-16 ***
differentTRUE -0.03615    0.12902   -0.28    0.779    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 1921.7  on 2946  degrees of freedom
Residual deviance: 1921.7  on 2945  degrees of freedom
AIC: 1925.7

Number of Fisher Scoring iterations: 4