2-mers UC 50 bases upstrand from start codon

[CSV file]

Density of motif

t-test: p=2.21193e-05

Neutral set average density: 0.0778392

Different set average density: 0.0842455

Presence of motif

           motif_present
gene_set    absent present
  different     12     982
  neutral       41    1912

Fisher's exact test: p=0.10595

Binomial GLM: p=0.0888961

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-2.9722   0.1559   0.2060   0.2060   0.2060  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)     3.8423     0.1578  24.343   <2e-16 ***
differentTRUE   0.5624     0.3306   1.701   0.0889 .  
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 530.98  on 2946  degrees of freedom
Residual deviance: 527.80  on 2945  degrees of freedom
AIC: 531.8

Number of Fisher Scoring iterations: 7