2-mers UC 50 bases downstrand from stop codon

[CSV file]

Density of motif

t-test: p=3.36945e-18

Neutral set average density: 0.0712238

Different set average density: 0.0857746

Presence of motif

           motif_present
gene_set    absent present
  different     17     977
  neutral       96    1857

Fisher's exact test: p=6.48614e-06

Binomial GLM: p=4.26022e-05

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-2.8525   0.1857   0.3175   0.3175   0.3175  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)     2.9624     0.1047  28.303  < 2e-16 ***
differentTRUE   1.0889     0.2660   4.093 4.26e-05 ***
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 958.63  on 2946  degrees of freedom
Residual deviance: 937.69  on 2945  degrees of freedom
AIC: 941.69

Number of Fisher Scoring iterations: 6