2-mers UU 50 bases downstrand from stop codon

[CSV file]

Density of motif

t-test: p=0.00100773

Neutral set average density: 0.212606

Different set average density: 0.200523

Presence of motif

           motif_present
gene_set    absent present
  different      3     991
  neutral        8    1945

Fisher's exact test: p=0.75978

Binomial GLM: p=0.651245

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-3.4068   0.0778   0.0906   0.0906   0.0906  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)     5.4936     0.3543  15.506   <2e-16 ***
differentTRUE   0.3065     0.6781   0.452    0.651    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 144.95  on 2946  degrees of freedom
Residual deviance: 144.74  on 2945  degrees of freedom
AIC: 148.74

Number of Fisher Scoring iterations: 8