t-test: p=1.09362e-32
Neutral set average density: 0.0505649
Different set average density: 0.0373986
motif_present gene_set absent present different 10 984 neutral 15 1938
Fisher's exact test: p=0.527269
Binomial GLM: p=0.506677
Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)
Deviance Residuals:
Min 1Q Median 3Q Max
-3.1206 0.1242 0.1242 0.1422 0.1422
Coefficients:
Estimate Std. Error z value Pr(>|z|)
(Intercept) 4.8614 0.2592 18.757 <2e-16 ***
differentTRUE -0.2723 0.4101 -0.664 0.507
---
Signif. codes: 0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1
(Dispersion parameter for binomial family taken to be 1)
Null deviance: 288.27 on 2946 degrees of freedom
Residual deviance: 287.84 on 2945 degrees of freedom
AIC: 291.84
Number of Fisher Scoring iterations: 7
Binomial GLM adjusted for length: p=0.00201145
Call:
glm(formula = motif_present ~ length + different, family = binomial,
data = daf)
Deviance Residuals:
Min 1Q Median 3Q Max
-3.4770 0.0271 0.0867 0.1538 0.5032
Coefficients:
Estimate Std. Error z value Pr(>|z|)
(Intercept) 2.98007 0.40626 7.335 2.21e-13 ***
length 0.01770 0.00412 4.297 1.73e-05 ***
differentTRUE -1.33119 0.43101 -3.089 0.00201 **
---
Signif. codes: 0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1
(Dispersion parameter for binomial family taken to be 1)
Null deviance: 288.27 on 2946 degrees of freedom
Residual deviance: 249.30 on 2944 degrees of freedom
AIC: 255.3
Number of Fisher Scoring iterations: 10