3-mers AAC 50 bases downstrand from stop codon

[CSV file]

Density of motif

t-test: p=0.204329

Neutral set average density: 0.0130466

Different set average density: 0.0122334

Presence of motif

           motif_present
gene_set    absent present
  different    549     445
  neutral     1052     901

Fisher's exact test: p=0.506154

Binomial GLM: p=0.481703

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
   Min      1Q  Median      3Q     Max  
-1.112  -1.112  -1.090   1.244   1.268  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)   -0.15494    0.04539  -3.413 0.000641 ***
differentTRUE -0.05508    0.07829  -0.704 0.481703    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 4063.3  on 2946  degrees of freedom
Residual deviance: 4062.8  on 2945  degrees of freedom
AIC: 4066.8

Number of Fisher Scoring iterations: 3