3-mers AAU 50 bases upstrand from start codon

[CSV file]

Density of motif

t-test: p=0.0260121

Neutral set average density: 0.0377471

Different set average density: 0.0400402

Presence of motif

           motif_present
gene_set    absent present
  different    118     876
  neutral      314    1639

Fisher's exact test: p=0.00241683

Binomial GLM: p=0.00235321

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-2.0645   0.5027   0.5921   0.5921   0.5921  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)     1.6524     0.0616  26.824  < 2e-16 ***
differentTRUE   0.3522     0.1158   3.042  0.00235 ** 
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 2456.3  on 2946  degrees of freedom
Residual deviance: 2446.7  on 2945  degrees of freedom
AIC: 2450.7

Number of Fisher Scoring iterations: 4