3-mers AAU 500 bases upstrand from stop codon

[CSV file]

Density of motif

t-test: p=0.0238786

Neutral set average density: 0.0320512

Different set average density: 0.0330704

Presence of motif

           motif_present
gene_set    absent present
  different      0     994
  neutral        6    1947

Fisher's exact test: p=0.10322

Binomial GLM: p=0.99124

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-3.4016   0.0000   0.0784   0.0784   0.0784  

Coefficients:
               Estimate Std. Error z value Pr(>|z|)    
(Intercept)      5.7823     0.4089  14.142   <2e-16 ***
differentTRUE   16.7838  1528.6889   0.011    0.991    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 86.349  on 2946  degrees of freedom
Residual deviance: 81.406  on 2945  degrees of freedom
AIC: 85.406

Number of Fisher Scoring iterations: 21