3-mers AAU 50 bases downstrand from stop codon

[CSV file]

Density of motif

t-test: p=4.28906e-06

Neutral set average density: 0.0412186

Different set average density: 0.0364386

Presence of motif

           motif_present
gene_set    absent present
  different    145     849
  neutral      248    1705

Fisher's exact test: p=0.168935

Binomial GLM: p=0.154105

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-2.0316   0.5212   0.5212   0.5616   0.5616  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)    1.92789    0.06796  28.367   <2e-16 ***
differentTRUE -0.16057    0.11266  -1.425    0.154    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 2314.7  on 2946  degrees of freedom
Residual deviance: 2312.7  on 2945  degrees of freedom
AIC: 2316.7

Number of Fisher Scoring iterations: 4