3-mers ACA 50 bases upstrand from start codon

[CSV file]

Density of motif

t-test: p=0.406632

Neutral set average density: 0.0166001

Different set average density: 0.0159759

Presence of motif

           motif_present
gene_set    absent present
  different    468     526
  neutral      874    1079

Fisher's exact test: p=0.240593

Binomial GLM: p=0.229712

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
   Min      1Q  Median      3Q     Max  
-1.268  -1.268   1.089   1.089   1.128  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)    0.21071    0.04551   4.630 3.65e-06 ***
differentTRUE -0.09388    0.07816  -1.201     0.23    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 4061.9  on 2946  degrees of freedom
Residual deviance: 4060.5  on 2945  degrees of freedom
AIC: 4064.5

Number of Fisher Scoring iterations: 3