3-mers ACA 500 bases upstrand from stop codon

[CSV file]

Density of motif

t-test: p=0.130737

Neutral set average density: 0.0176109

Different set average density: 0.0171851

Presence of motif

           motif_present
gene_set    absent present
  different      0     994
  neutral        2    1951

Fisher's exact test: p=0.552796

Binomial GLM: p=0.994719

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-3.7105   0.0000   0.0453   0.0453   0.0453  

Coefficients:
               Estimate Std. Error z value Pr(>|z|)    
(Intercept)      6.8830     0.7075   9.729   <2e-16 ***
differentTRUE   16.6831  2520.3816   0.007    0.995    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 33.180  on 2946  degrees of freedom
Residual deviance: 31.534  on 2945  degrees of freedom
AIC: 35.534

Number of Fisher Scoring iterations: 22