3-mers ACC 500 bases upstrand from stop codon

[CSV file]

Density of motif

t-test: p=8.05924e-07

Neutral set average density: 0.0105981

Different set average density: 0.00931187

Presence of motif

           motif_present
gene_set    absent present
  different     25     969
  neutral       36    1917

Fisher's exact test: p=0.221732

Binomial GLM: p=0.227708

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-2.8262   0.1929   0.1929   0.2257   0.2257  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)     3.9750     0.1682  23.632   <2e-16 ***
differentTRUE  -0.3176     0.2633  -1.206    0.228    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 593.80  on 2946  degrees of freedom
Residual deviance: 592.38  on 2945  degrees of freedom
AIC: 596.38

Number of Fisher Scoring iterations: 6