3-mers ACC 50 bases downstrand from stop codon

[CSV file]

Density of motif

t-test: p=0.00769189

Neutral set average density: 0.00686124

Different set average density: 0.00818913

Presence of motif

           motif_present
gene_set    absent present
  different    663     331
  neutral     1419     534

Fisher's exact test: p=0.000847405

Binomial GLM: p=0.000799723

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.9000  -0.7993  -0.7993   1.4830   1.6104  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)   -0.97731    0.05077 -19.251   <2e-16 ***
differentTRUE  0.28266    0.08430   3.353    8e-04 ***
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 3567.5  on 2946  degrees of freedom
Residual deviance: 3556.3  on 2945  degrees of freedom
AIC: 3560.3

Number of Fisher Scoring iterations: 4