3-mers ACG 50 bases upstrand from start codon

[CSV file]

Density of motif

t-test: p=0.182611

Neutral set average density: 0.00529442

Different set average density: 0.00591549

Presence of motif

           motif_present
gene_set    absent present
  different    763     231
  neutral     1522     431

Fisher's exact test: p=0.483905

Binomial GLM: p=0.471546

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.7273  -0.7273  -0.7062  -0.7062   1.7384  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)   -1.26167    0.05456  -23.12   <2e-16 ***
differentTRUE  0.06683    0.09283    0.72    0.472    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 3139.8  on 2946  degrees of freedom
Residual deviance: 3139.3  on 2945  degrees of freedom
AIC: 3143.3

Number of Fisher Scoring iterations: 4