3-mers ACG 500 bases upstrand from stop codon

[CSV file]

Density of motif

t-test: p=0.0106983

Neutral set average density: 0.010171

Different set average density: 0.0106942

Presence of motif

           motif_present
gene_set    absent present
  different     10     984
  neutral       28    1925

Fisher's exact test: p=0.390305

Binomial GLM: p=0.333114

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-3.0329   0.1422   0.1699   0.1699   0.1699  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)     4.2305     0.1904  22.225   <2e-16 ***
differentTRUE   0.3586     0.3705   0.968    0.333    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 406.18  on 2946  degrees of freedom
Residual deviance: 405.19  on 2945  degrees of freedom
AIC: 409.19

Number of Fisher Scoring iterations: 7