3-mers ACG 50 bases downstrand from stop codon

[CSV file]

Density of motif

t-test: p=0.829141

Neutral set average density: 0.00446493

Different set average density: 0.00454728

Presence of motif

           motif_present
gene_set    absent present
  different    798     196
  neutral     1569     384

Fisher's exact test: p=1

Binomial GLM: p=0.971033

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.6628  -0.6628  -0.6617  -0.6617   1.8036  

Coefficients:
               Estimate Std. Error z value Pr(>|z|)    
(Intercept)   -1.407551   0.056934 -24.722   <2e-16 ***
differentTRUE  0.003557   0.097963   0.036    0.971    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 2923.1  on 2946  degrees of freedom
Residual deviance: 2923.1  on 2945  degrees of freedom
AIC: 2927.1

Number of Fisher Scoring iterations: 4