3-mers ACU 50 bases upstrand from start codon

[CSV file]

Density of motif

t-test: p=0.462465

Neutral set average density: 0.0142038

Different set average density: 0.0137223

Presence of motif

           motif_present
gene_set    absent present
  different    494     500
  neutral      962     991

Fisher's exact test: p=0.84554

Binomial GLM: p=0.821045

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
   Min      1Q  Median      3Q     Max  
-1.190  -1.190   1.165   1.165   1.172  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)
(Intercept)    0.02970    0.04526   0.656    0.512
differentTRUE -0.01763    0.07793  -0.226    0.821

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 4085.0  on 2946  degrees of freedom
Residual deviance: 4084.9  on 2945  degrees of freedom
AIC: 4088.9

Number of Fisher Scoring iterations: 3