3-mers ACU 500 bases upstrand from stop codon

[CSV file]

Density of motif

t-test: p=1.40025e-05

Neutral set average density: 0.0148162

Different set average density: 0.0138189

Presence of motif

           motif_present
gene_set    absent present
  different      2     992
  neutral        3    1950

Fisher's exact test: p=1

Binomial GLM: p=0.76728

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-3.5996   0.0554   0.0554   0.0635   0.0635  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)     6.4770     0.5778  11.210   <2e-16 ***
differentTRUE  -0.2704     0.9137  -0.296    0.767    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 73.783  on 2946  degrees of freedom
Residual deviance: 73.697  on 2945  degrees of freedom
AIC: 77.697

Number of Fisher Scoring iterations: 9