3-mers ACU 50 bases downstrand from stop codon

[CSV file]

Density of motif

t-test: p=0.000608963

Neutral set average density: 0.0135381

Different set average density: 0.0157746

Presence of motif

           motif_present
gene_set    absent present
  different    443     551
  neutral      991     962

Fisher's exact test: p=0.00159219

Binomial GLM: p=0.00153383

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
   Min      1Q  Median      3Q     Max  
-1.271  -1.165   1.086   1.190   1.190  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)   
(Intercept)   -0.02970    0.04526  -0.656  0.51170   
differentTRUE  0.24787    0.07824   3.168  0.00153 **
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 4083.3  on 2946  degrees of freedom
Residual deviance: 4073.2  on 2945  degrees of freedom
AIC: 4077.2

Number of Fisher Scoring iterations: 3