3-mers AGA 50 bases upstrand from start codon

[CSV file]

Density of motif

t-test: p=0.0638909

Neutral set average density: 0.0167947

Different set average density: 0.015493

Presence of motif

           motif_present
gene_set    absent present
  different    447     547
  neutral      849    1104

Fisher's exact test: p=0.455866

Binomial GLM: p=0.438531

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
   Min      1Q  Median      3Q     Max  
-1.291  -1.291   1.068   1.068   1.093  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)    0.26264    0.04565   5.754 8.73e-09 ***
differentTRUE -0.06075    0.07841  -0.775    0.439    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 4042.5  on 2946  degrees of freedom
Residual deviance: 4041.9  on 2945  degrees of freedom
AIC: 4045.9

Number of Fisher Scoring iterations: 3