3-mers AGC 50 bases upstrand from start codon

[CSV file]

Density of motif

t-test: p=0.475031

Neutral set average density: 0.00719918

Different set average density: 0.00754527

Presence of motif

           motif_present
gene_set    absent present
  different    686     308
  neutral     1375     578

Fisher's exact test: p=0.444572

Binomial GLM: p=0.436451

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.8612  -0.8377  -0.8377   1.5308   1.5605  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)   -0.86664    0.04957 -17.482   <2e-16 ***
differentTRUE  0.06586    0.08463   0.778    0.436    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 3603.6  on 2946  degrees of freedom
Residual deviance: 3603.0  on 2945  degrees of freedom
AIC: 3607

Number of Fisher Scoring iterations: 4