3-mers AGC 50 bases downstrand from stop codon

[CSV file]

Density of motif

t-test: p=0.514003

Neutral set average density: 0.00426011

Different set average density: 0.00402414

Presence of motif

           motif_present
gene_set    absent present
  different    816     178
  neutral     1586     367

Fisher's exact test: p=0.581132

Binomial GLM: p=0.558923

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.6452  -0.6452  -0.6452  -0.6282   1.8547  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)   -1.46361    0.05793 -25.267   <2e-16 ***
differentTRUE -0.05902    0.10099  -0.584    0.559    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 2822.0  on 2946  degrees of freedom
Residual deviance: 2821.7  on 2945  degrees of freedom
AIC: 2825.7

Number of Fisher Scoring iterations: 4