3-mers AGG 50 bases upstrand from start codon

[CSV file]

Density of motif

t-test: p=0.518991

Neutral set average density: 0.00641065

Different set average density: 0.00613682

Presence of motif

           motif_present
gene_set    absent present
  different    722     272
  neutral     1408     545

Fisher's exact test: p=0.794008

Binomial GLM: p=0.756156

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.8089  -0.8089  -0.7996   1.5977   1.6099  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)   -0.94914    0.05045 -18.814   <2e-16 ***
differentTRUE -0.02708    0.08722  -0.311    0.756    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 3479.3  on 2946  degrees of freedom
Residual deviance: 3479.2  on 2945  degrees of freedom
AIC: 3483.2

Number of Fisher Scoring iterations: 4